Had case open and closed many times today, so hope nothing has come loose and everything still works ok - wise to test this out before trying a stratgy to get the case shut. That is my fear at the moment, no matter how careful you are, a short can happen on projects like this, or similar and instantly fry the whole system in worst case scenario.
I will probably have to relocate the ribbon cable on the DC drive board, so I can hot glue the drive unit to the case backing, at this rate, assuming that solves the issue. The problem is I need the back end of the drive unit to raise 2mm more than it does; and it is proving to be a problem - so the result at the moment is a CD is free on the spindle area but not the opposite end, so catches on the case. This has to be resolved.
Will keep you posted on progress!
Today's update:
The drive unit drops in perfectly into its space in the case top, however doesn't quite get into that position raising it inside the case, hence looking at securing the drive unit firmly into the case itself, which means I may as well fill in the screw holes made before as they won't be needed.
To keep it a little easier, rather than wiring directly to the ribbon cable port, I removed a spare one from a dead board by soldering all over the pins, then when the soldering iron was placed on the large blob, all solder heated including over all the pins, thereby enabling the port to lift off with pins intact. This was wired, and at the other end, soldered the wires directly to the ribbon. This was very careful soldering indeed - enough to secure a solder joint on the plastic cable but not to damage it.
The idea is that this cable acts like an extension cable; one end to extend the existing ribbon from the drive unit and the other to pop into the drive board port.
Hurrah!
This works - just tested it, to the start of a game. Looks like my cheap and cheerful home-made ffc connector worked like a dream! I couldn't find any fcc cables or on ebay that were suitable (16 pin 0.93mm pitch) let alone long enough; so making my own was THE option. Turned out to work well, and very cheap to make; issue is putting a hot soldering iron to a ribbon cable, but if you are careful, you are fine.
Pic of it working although of course a still photo isn't showing the disc rotating!

Now, just need to secure the drive unit in place with hot glue, and work out a clear path for the extra wiring to fill into so the case will shut. One issue after another, huh!